PathLinker

PathLinker is a pathway reconstruction algorithm which links the sources and target of the input interactome with a k-shortest paths (implemented with Yen’s algorithm) to a pathway reconstruction context.

PathLinker takes one optional argument:

• k: The number of paths to find (k shortest paths).

External links

• Source code: https://github.com/Murali-group/PathLinker

• Associated papers: https://doi.org/10.1038/npjsba.2016.2 and https://doi.org/10.1089/cmb.2012.0274.